Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs2077985 chr2:30677618 G/C 1.29E-8 119 37.37 50.07 33.13 KM Plot
THYM rs2080814 chr14:78310587 T/C 6.5E-5 119 25.83 38.48 50.03 KM Plot
THYM rs2084301 chr2:30844484 G/A 1.54E-8 118 36.03 50.1 33.13 KM Plot
THYM rs2098625 chr19:29306346 A/G 7.44E-6 115 46.6 35 22.9 KM Plot
THYM rs2098904 chr15:84406255 A/G 0.000121 119 14.45 44.5 40.67 KM Plot
THYM rs2100112 chr2:30844626 A/G 1.71E-8 117 37.37 50.07 33.13 KM Plot
THYM rs2100113 chr2:30844164 C/A 1.54E-8 118 36.03 50.1 33.13 KM Plot
THYM rs2102575 chr4:187131504 G/A 1.49E-8 118 12.63 41.77 41.7 KM Plot
THYM rs2102635 chr1:227456550 C/G 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs2102637 chr1:227456479 T/C 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs2102639 chr1:227421245 T/C 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs2105672 chr11:125586278 C/G 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs2110464 chr7:76137375 A/G 0.00024 119 28.43 46.23 39.5 KM Plot
THYM rs2110732 chr7:29699495 T/G 5.23E-13 118 37.63 46.27 6 KM Plot
THYM rs2112129 chr14:78298521 G/A 0.000174 118 24.17 46.27 38.83 KM Plot